SRX8037076
GSM4447199: ChIP-seq of KLF5 in HARA, replicate 2; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
KLF5

Cell type

Cell type Class
Lung
Cell type
HARA
Primary Tissue
Lung
Tissue Diagnosis
Carcinoma Squamous Cell

Attributes by original data submitter

Sample

source_name
Cancer cell line
antibody
KLF5, abcam ab137676
cell line
HARA
genotype
wildtype

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
ChIP-enriched DNA NEB Ultra II DNA library prep kit

Sequencing Platform

instrument_model
NextSeq 550

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
20110258
Reads aligned (%)
98.8
Duplicates removed (%)
10.1
Number of peaks
19288 (qval < 1E-05)

hg19

Number of total reads
20110258
Reads aligned (%)
98.3
Duplicates removed (%)
10.9
Number of peaks
19249 (qval < 1E-05)

Base call quality data from DBCLS SRA